ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	SUGP1
Previous Symbol	SF4
Symbol Alias	F23858, DKFZp434E2216, RBP
Approved Name	SURP and G patch domain containing 1
Previous Name	"splicing factor 4"
Location	19p13
Position	chr19:19386827-19431653, -1
External Links	HGNC: 18643 Entrez Gene: 57794 Ensembl: ENSG00000105705 UCSC: uc002nmh.3
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by LD-proxy

Gene related studies (count: 0)

Gene related SNPs (count: 4)

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)

rs_ID	Location	Functional Annotation
rs2010506	chr19:19387356(Fwd)	3_prime_UTR_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs11555053	chr19:19390185(Fwd)	3_prime_UTR_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant; synonymous_variant
rs6511027	chr19:19391851(Fwd)	intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant
rs17751061	chr19:19413092(Fwd)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 8)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 1)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005681	spliceosomal complex	cellular component	IEA	43

GO terms by database search (count: 7)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0000398	mRNA splicing, via spliceosome	biological process	TAS	58
GO:0010467	gene expression	biological process	TAS	154
GO:0003723	RNA binding	molecular function	IEA	115
GO:0005654	nucleoplasm	cellular component	TAS	210
GO:0008380	RNA splicing	biological process	TAS	70
GO:0005730	nucleolus	cellular component	IDA	271
GO:0005634	nucleus	cellular component	IDA	877

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with SUGP1 (count: 45)

Gene Symbol	Pathway Count	Pathway List
HNRNPA1	8	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
SF3A1	8	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
HNRNPA2B1	8	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
U2AF1	8	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
SF3A3	7	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
PRPF6	7	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing; nucleus;
EFTUD2	7	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
HNRNPH1	7	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleolus; nucleus;
SNRNP200	7	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
SF3B2	7	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
FUS	7	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleolus; nucleus;
PRPF4	7	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing; nucleolus; nucleus;
SNW1	6	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; nucleolus; nucleus;
SNRPD1	6	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleus;
RNPS1	6	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleus;
U2AF2	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
DHX8	6	mRNA splicing, via spliceosome; RNA binding; spliceosomal complex; RNA splicing; nucleolus; nucleus;
NCBP1	6	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleus;
SNRPF	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
POLR2G	6	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleus;
SNRPA	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
SF3B4	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
SNRPG	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
HNRNPC	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
DHX9	6	mRNA splicing, via spliceosome; gene expression; nucleoplasm; RNA splicing; nucleolus; nucleus;
CPSF7	6	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing; nucleus;
SNRPA1	6	mRNA splicing, via spliceosome; gene expression; RNA binding; spliceosomal complex; nucleoplasm; RNA splicing;
DDX23	6	mRNA splicing, via spliceosome; gene expression; nucleoplasm; RNA splicing; nucleolus; nucleus;
SMC1A	6	mRNA splicing, via spliceosome; gene expression; nucleoplasm; RNA splicing; nucleolus; nucleus;
SNRPB	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
SNRPD2	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
TXNL4A	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
SF3B3	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
CDC40	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
SNRPD3	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
CD2BP2	5	mRNA splicing, via spliceosome; gene expression; nucleoplasm; RNA splicing; nucleus;
SF3A2	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
SNRPB2	5	mRNA splicing, via spliceosome; gene expression; spliceosomal complex; nucleoplasm; RNA splicing;
PRPF8	5	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing;
SF1	5	mRNA splicing, via spliceosome; RNA binding; spliceosomal complex; nucleolus; nucleus;
CPSF3	5	mRNA splicing, via spliceosome; gene expression; RNA binding; nucleoplasm; RNA splicing;
GEMIN2	5	gene expression; spliceosomal complex; nucleoplasm; RNA splicing; nucleus;
HSPA8	5	gene expression; spliceosomal complex; RNA splicing; nucleolus; nucleus;
SCAF8	5	RNA binding; spliceosomal complex; RNA splicing; nucleolus; nucleus;
RBM4	5	RNA binding; nucleoplasm; RNA splicing; nucleolus; nucleus;

Genes shared at least 2 KEGG pathways with SUGP1 (count: 0)

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Region: chr19:19386827..19431653 View in gBrowse