ADHDgene Database

SNP Report

Basic Info

Name	rs985409 dbSNP Ensembl
Location	chr7:104171423(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000401970; ENST00000424859; ENST00000535008; ENST00000543266)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Schimmelmann, B. G.,2013			Nominal two-sided P-value=0.044 (OR=1.17;95%CI=1.00-1.35) Nominal two-sided P-value=0.044 (OR=1.17;95%CI=1.00-1.35)	Association signal of nominal p value is below 5%, but it di...... Association signal of nominal p value is below 5%, but it did not survive adjustment for multiple testing. More...	Significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
LHFPL3	lipoma HMGIC fusion partner-like 3	7q22.2	1(1/0/0)

SNPs in LD with rs985409 (count: 24) View in gBrowse (chr7:104163626..104206297 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs10255529	intron_variant	0.954[CHB]; 0.951[JPT]
rs7785646	intron_variant	0.856[CHB]; 0.899[JPT]
rs9987005	intron_variant	0.91[CHB]; 0.866[JPT]
rs756667	intron_variant	0.91[CHB]; 0.866[JPT]
rs1989781	intron_variant	0.908[CHB]; 0.821[CHD]; 0.953[JPT]
rs1156368	intron_variant	0.908[CHB]; 0.863[JPT]
rs17421541	intron_variant	0.866[JPT]
rs7783352	intron_variant	0.91[CEU]; 1.0[CHB]; 1.0[JPT]
rs2385173	intron_variant	0.952[CHB]; 0.952[JPT]
rs756668	intron_variant	0.954[CHB]; 0.846[CHD]; 0.953[JPT]
rs9656097	intron_variant	0.952[CHB]; 0.949[JPT]
rs6465994	intron_variant	0.841[TSI]; 0.954[CHB]; 0.954[CHD]; 1.0[JPT]; 0.972[GIH]; 0.852[LWK]; 0.855[MEX]; 0.887[MKK]; 1.0[YRI]
rs12216618	intron_variant	0.817[JPT]
rs6465995	intron_variant	0.868[CHB]; 0.866[JPT]
rs4730019	intron_variant	1.0[CHB]; 0.944[JPT]
rs2193203	intron_variant	0.866[JPT]
rs7804269	intron_variant	0.908[CHB]; 0.821[CHD]; 0.953[JPT]
rs2188170	intron_variant	0.953[CHB]; 0.866[JPT]
rs12535955	intron_variant	0.954[CHB]; 0.866[JPT]
rs9656100	intron_variant	0.863[CHB]; 0.809[CHD]; 0.953[JPT]
rs6949801	intron_variant	0.91[CHB]; 0.828[CHD]; 0.953[JPT]
rs7804412	intron_variant	0.953[CHB]; 0.952[JPT]
rs9649272	intron_variant	0.91[CHB]; 0.866[JPT]
rs11972645	intron_variant	0.899[CHB]; 0.857[JPT]