ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs980510 dbSNP Ensembl
Location	Chr5:44318532(Fwd)
Variant Alleles	C/A
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000264664)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	C/A		P-value=0.619 in the catergorical analysis, P-value>0.05 in ...... P-value=0.619 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
FGF10	fibroblast growth factor 10	5p13-p12	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs980510 (count: 58) View in gBrowse (chr5:44267175..44392142 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 58)

rs_ID	Functional Annotation	r²[population]
rs1374962	intron_variant	0.88[CEU]; 0.919[TSI]
rs2121875	intron_variant	1.0[CEU]; 1.0[CHB]; 0.975[CHD]; 0.977[GIH]; 0.816[JPT]; 0.956[MEX]; 0.898[TSI]
rs10512844	intron_variant	0.88[CEU]; 0.921[TSI]
rs1542219		0.959[CEU]; 1.0[CHB]; 1.0[CHD]; 0.907[GIH]; 1.0[JPT]; 0.912[MEX]; 0.922[TSI]
rs16873923		0.835[CEU]
rs1448035	intron_variant	0.88[CEU]
rs6859730	intron_variant	1.0[CEU]; 1.0[CHB]; 0.81[JPT]
rs10072476	downstream_gene_variant	0.959[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.912[MEX]; 0.948[TSI]
rs1448037	intron_variant	0.874[CEU]
rs900379	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs13165847	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs4866893	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs1374977		0.917[CEU]; 0.898[CHB]; 1.0[JPT]
rs1482672	intron_variant	1.0[CEU]; 1.0[CHB]; 0.975[CHD]; 0.977[GIH]; 0.816[JPT]; 0.956[MEX]; 0.898[TSI]
rs10073166	intron_variant	0.873[CEU]
rs1482679	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 0.864[CHB]; 0.878[CHD]; 0.838[GIH]; 0.816[JPT]; 0.898[TSI]
rs10941664	intron_variant	0.88[CEU]
rs339502	intron_variant	0.917[CEU]; 0.828[MEX]; 0.845[TSI]
rs4866891	intron_variant	1.0[CEU]; 1.0[CHB]; 0.975[CHD]; 1.0[GIH]; 0.816[JPT]; 1.0[MEX]; 0.974[TSI]
rs2034347		0.959[CEU]; 0.954[CHB]; 1.0[JPT]
rs6866891		0.839[CEU]
rs10512845	intron_variant	0.88[CEU]
rs2170582	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs1448044		0.958[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.956[MEX]; 0.82[MKK]; 0.946[TSI]
rs983373	intron_variant	0.831[CEU]
rs6892212	intron_variant	0.899[CHB]; 0.807[JPT]
rs13170645	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs10074405	downstream_gene_variant	0.864[CEU]
rs10941663		0.842[CEU]
rs6451761	intron_variant	0.906[CEU]
rs11750845	intron_variant	1.0[CHB]; 0.975[CHD]; 0.848[GIH]; 0.816[JPT]
rs1482689	intron_variant	0.88[CEU]; 0.845[TSI]
rs2330545	intron_variant	1.0[CEU]; 1.0[CHB]; 0.975[CHD]; 0.977[GIH]; 0.811[JPT]; 0.956[MEX]; 0.974[TSI]
rs2034346		0.839[CEU]
rs9292903	downstream_gene_variant	0.842[CEU]; 0.896[TSI]
rs1448039	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs13180550	intron_variant	1.0[CEU]; 1.0[CHB]; 0.812[JPT]
rs16874036	intron_variant	0.819[CEU]
rs6883160		0.8[CEU]; 0.87[TSI]
rs1482680	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.822[CHB]; 0.83[CHD]; 0.816[JPT]; 0.851[TSI]
rs7708529	intron_variant	1.0[CEU]; 1.0[CHB]; 0.975[CHD]; 0.977[GIH]; 0.816[JPT]; 0.956[MEX]; 0.974[TSI]
rs2053786		0.958[CEU]; 1.0[CHB]; 1.0[JPT]
rs1482675	intron_variant	0.88[CEU]
rs7709596		0.959[CEU]; 1.0[CHB]; 1.0[JPT]
rs12652957	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs1482671	intron_variant	1.0[CEU]; 1.0[CHB]; 0.816[JPT]
rs13156213		0.956[CEU]; 1.0[CHB]; 1.0[JPT]
rs593307	intron_variant	0.88[CEU]
rs1011814	intron_variant	1.0[CEU]; 1.0[CHB]; 0.975[CHD]; 0.977[GIH]; 0.816[JPT]; 0.956[MEX]; 0.974[TSI]
rs2330544	intron_variant	1.0[CEU]; 0.955[CHB]; 0.975[CHD]; 0.977[GIH]; 0.81[JPT]; 0.956[MEX]; 0.949[TSI]
rs10473353	intron_variant	0.91[CEU]
rs987642	intron_variant	0.88[CEU]; 0.921[TSI]
rs1839090	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.912[MEX]; 0.974[TSI]
rs1482673	intron_variant	1.0[CHB]
rs1550937	intron_variant	0.879[CEU]
rs1374964		0.842[CEU]; 0.821[TSI]
rs1374961	3_prime_UTR_variant	0.959[CEU]; 1.0[CHB]; 1.0[CHD]; 0.976[GIH]; 1.0[JPT]; 0.912[MEX]; 0.948[TSI]
rs339509	intron_variant	0.88[CEU]; 0.831[MEX]; 0.845[TSI]