SNP Report

Basic Info
Name |
rs713586
dbSNP
Ensembl
|
Location |
chr2:25158008(Fwd) |
Variant Alleles |
T/C |
Ancestral Allele |
C |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 42)

rs_ID |
Functional Annotation |
r2[population] |
rs6545814
|
intron_variant |
0.821[CHB]; 0.823[GIH]
|
rs483428
|
intron_variant; upstream_gene_variant |
0.894[MKK]
|
rs6724772
|
intron_variant |
0.81[CHB]
|
rs754537
|
downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.909[CHB]; 0.859[JPT]
|
rs1172294
|
3_prime_UTR_variant; downstream_gene_variant |
0.909[CHB]; 0.904[CHD]; 0.859[JPT]; 0.909[MEX]; 0.972[MKK]
|
rs2384061
|
intron_variant |
0.821[CHB]
|
rs6722587
|
intron_variant |
0.821[CHB]
|
rs10182181
|
|
0.924[CEU]; 0.884[TSI]; 0.907[CHB]; 0.865[GIH]; 0.956[MEX]; 0.919[MKK]
|
rs6706316
|
intron_variant |
0.821[CHB]
|
rs11125884
|
intron_variant; nc_transcript_variant |
0.86[CHD]; 0.868[MEX]; 0.919[MKK]
|
rs6737082
|
downstream_gene_variant; intron_variant |
0.821[CHB]; 1.0[MEX]; 0.836[MKK]
|
rs754536
|
downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.909[CHB]; 0.859[JPT]
|
rs6733224
|
intron_variant |
0.821[CHB]; 0.823[GIH]
|
rs1530016
|
intron_variant; upstream_gene_variant |
0.894[MKK]
|
rs10200566
|
intron_variant |
0.803[CHB]; 0.819[MKK]
|
rs11686663
|
intron_variant |
0.821[CHB]
|
rs4077678
|
intron_variant |
0.821[CHB]
|
rs6545800
|
intron_variant |
0.821[CHB]
|
rs10198275
|
intron_variant |
0.821[CHB]; 0.823[GIH]
|
rs713587
|
|
1.0[CEU]; 1.0[TSI]; 0.926[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.956[MEX]; 1.0[YRI]
|
rs2384054
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs6712981
|
intron_variant |
0.821[CHB]
|
rs6752378
|
|
0.924[CEU]; 0.885[TSI]; 0.907[CHB]; 0.865[GIH]; 0.956[MEX]; 0.919[MKK]
|
rs11900505
|
intron_variant |
0.821[CHB]; 0.823[GIH]
|
rs6756609
|
intron_variant |
0.821[CHB]
|
rs6713978
|
intron_variant |
0.821[CHB]
|
rs6726199
|
intron_variant |
0.819[CHB]
|
rs522806
|
intron_variant |
0.894[MKK]
|
rs6726261
|
|
0.887[GIH]
|
rs1077492
|
intron_variant |
0.816[CHB]; 0.838[CHD]; 0.911[MEX]; 0.945[MKK]
|
rs6545790
|
intron_variant |
0.821[CHB]
|
rs4665276
|
intron_variant; nc_transcript_variant |
0.857[CHB]
|
rs4665736
|
downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.859[CHB]; 0.859[JPT]
|
rs11676272
|
missense_variant |
0.889[CEU]; 0.885[TSI]; 0.863[CHB]; 0.865[GIH]; 0.956[MEX]; 0.891[MKK]
|
rs6721750
|
intron_variant |
0.819[CHB]; 0.82[GIH]
|
rs12466350
|
intron_variant; nc_transcript_variant |
0.86[CHD]; 0.911[MEX]; 0.945[MKK]
|
rs6723803
|
intron_variant |
0.821[CHB]
|
rs6752483
|
intron_variant |
0.817[CHB]
|
rs1865689
|
intron_variant |
0.819[CHB]
|
rs3903070
|
intron_variant |
0.821[CHB]
|
rs6545809
|
intron_variant |
0.821[CHB]
|
rs1982200
|
intron_variant; nc_transcript_variant |
0.859[CHB]; 0.882[CHD]; 0.911[MEX]; 0.945[MKK]
|