ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs713586 dbSNP Ensembl
Location	chr2:25158008(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Albayrak O., 2013			ADHD risk, P-value=0.66, corrected P-value=1, OR=0.97; Assoc...... ADHD risk, P-value=0.66, corrected P-value=1, OR=0.97; Association to ADHD subphenotypes in the German sample, inattention, P-value=0.03, hyperactivity/impulsivity P-value=0.44; Association to ADHD subphenotypes in ADHD meta-analysis data, inattention, P-value=0.09, hyperactivity/impulsivity P-value=0.41, inattention and hyperactivity/impulsivity, P-value=0.73 More...	The BMI SNP risk alleles were associated with the quantitati...... The BMI SNP risk alleles were associated with the quantitative trait inattention with uncorrected P-values below 0.05. More...	Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DNAJC27	DnaJ (Hsp40) homolog, subfamily C, member 27	2p23.3	1(1/0/0)

Genes from other sources (count: 0)

SNPs in LD with rs713586 (count: 42) View in gBrowse (chr2:25107759..25316584 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 42)

rs_ID	Functional Annotation	r²[population]
rs6545814	intron_variant	0.821[CHB]; 0.823[GIH]
rs483428	intron_variant; upstream_gene_variant	0.894[MKK]
rs6724772	intron_variant	0.81[CHB]
rs754537	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	0.909[CHB]; 0.859[JPT]
rs1172294	3_prime_UTR_variant; downstream_gene_variant	0.909[CHB]; 0.904[CHD]; 0.859[JPT]; 0.909[MEX]; 0.972[MKK]
rs2384061	intron_variant	0.821[CHB]
rs6722587	intron_variant	0.821[CHB]
rs10182181		0.924[CEU]; 0.884[TSI]; 0.907[CHB]; 0.865[GIH]; 0.956[MEX]; 0.919[MKK]
rs6706316	intron_variant	0.821[CHB]
rs11125884	intron_variant; nc_transcript_variant	0.86[CHD]; 0.868[MEX]; 0.919[MKK]
rs6737082	downstream_gene_variant; intron_variant	0.821[CHB]; 1.0[MEX]; 0.836[MKK]
rs754536	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	0.909[CHB]; 0.859[JPT]
rs6733224	intron_variant	0.821[CHB]; 0.823[GIH]
rs1530016	intron_variant; upstream_gene_variant	0.894[MKK]
rs10200566	intron_variant	0.803[CHB]; 0.819[MKK]
rs11686663	intron_variant	0.821[CHB]
rs4077678	intron_variant	0.821[CHB]
rs6545800	intron_variant	0.821[CHB]
rs10198275	intron_variant	0.821[CHB]; 0.823[GIH]
rs713587		1.0[CEU]; 1.0[TSI]; 0.926[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.956[MEX]; 1.0[YRI]
rs2384054		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs6712981	intron_variant	0.821[CHB]
rs6752378		0.924[CEU]; 0.885[TSI]; 0.907[CHB]; 0.865[GIH]; 0.956[MEX]; 0.919[MKK]
rs11900505	intron_variant	0.821[CHB]; 0.823[GIH]
rs6756609	intron_variant	0.821[CHB]
rs6713978	intron_variant	0.821[CHB]
rs6726199	intron_variant	0.819[CHB]
rs522806	intron_variant	0.894[MKK]
rs6726261		0.887[GIH]
rs1077492	intron_variant	0.816[CHB]; 0.838[CHD]; 0.911[MEX]; 0.945[MKK]
rs6545790	intron_variant	0.821[CHB]
rs4665276	intron_variant; nc_transcript_variant	0.857[CHB]
rs4665736	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	0.859[CHB]; 0.859[JPT]
rs11676272	missense_variant	0.889[CEU]; 0.885[TSI]; 0.863[CHB]; 0.865[GIH]; 0.956[MEX]; 0.891[MKK]
rs6721750	intron_variant	0.819[CHB]; 0.82[GIH]
rs12466350	intron_variant; nc_transcript_variant	0.86[CHD]; 0.911[MEX]; 0.945[MKK]
rs6723803	intron_variant	0.821[CHB]
rs6752483	intron_variant	0.817[CHB]
rs1865689	intron_variant	0.819[CHB]
rs3903070	intron_variant	0.821[CHB]
rs6545809	intron_variant	0.821[CHB]
rs1982200	intron_variant; nc_transcript_variant	0.859[CHB]; 0.882[CHD]; 0.911[MEX]; 0.945[MKK]