SNP Report

Basic Info

SNP related studies (count: 1)

SNP related genes (count: 2)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 16)

rs_ID |
Functional Annotation |
r2[population] |
rs1971138
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.941[CHB]; 0.809[JPT]
|
rs965374
|
downstream_gene_variant; upstream_gene_variant |
0.887[CHB]; 0.867[JPT]
|
rs2289355
|
3_prime_UTR_variant; downstream_gene_variant |
0.878[CEU]; 0.941[CHB]; 0.809[JPT]
|
rs2278584
|
3_prime_UTR_variant; downstream_gene_variant |
0.918[CEU]; 0.883[CHB]; 0.868[JPT]
|
rs4953653
|
downstream_gene_variant |
0.918[CEU]; 0.837[CHB]; 0.807[JPT]
|
rs7566714
|
downstream_gene_variant |
1.0[CEU]; 0.941[CHB]; 0.868[JPT]; 0.937[GIH]
|
rs6713059
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
1.0[CHB]
|
rs7591304
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.936[CHB]; 0.868[JPT]
|
rs6544594
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.917[CHB]
|
rs4953631
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.941[CHB]; 0.868[JPT]
|
rs4953636
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.941[CHB]; 0.809[JPT]
|
rs1992286
|
downstream_gene_variant; synonymous_variant |
0.918[CEU]; 0.887[CHB]; 0.858[JPT]
|
rs1016607
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.941[CHB]; 0.809[JPT]
|
rs7578904
|
downstream_gene_variant |
0.88[CEU]
|
rs2278582
|
downstream_gene_variant |
0.918[CEU]; 0.932[TSI]; 0.887[CHB]; 0.868[JPT]; 0.851[GIH]
|
rs6544595
|
intron_variant; nc_transcript_variant; NMD_transcript_variant |
0.932[CHB]; 0.809[JPT]
|