SNP Report

Basic Info
Name |
rs6597539
dbSNP
Ensembl
|
Location |
chr9:134826121(Fwd) |
Variant Alleles |
A/C |
Ancestral Allele |
C |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000292035; ENST00000357028) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 12)

rs_ID |
Functional Annotation |
r2[population] |
rs4740333
|
intron_variant |
0.873[CEU]; 0.801[JPT]
|
rs11243585
|
intron_variant |
0.952[CHB]; 0.883[CHD]; 0.862[JPT]; 0.862[GIH]
|
rs12555726
|
intron_variant |
0.877[CEU]; 0.824[TSI]; 0.809[JPT]
|
rs11243562
|
intron_variant |
0.84[CEU]; 0.849[TSI]; 0.818[CHD]; 0.809[JPT]; 0.815[GIH]; 0.829[MEX]
|
rs4128957
|
intron_variant |
1.0[CEU]; 1.0[TSI]; 0.952[CHB]; 0.976[CHD]; 0.862[JPT]; 0.881[GIH]; 0.957[MEX]
|
rs10901112
|
intron_variant |
0.84[CEU]; 0.801[TSI]; 0.809[JPT]
|
rs7032759
|
intron_variant |
1.0[CEU]; 1.0[TSI]; 0.881[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.935[LWK]; 0.915[MEX]
|
rs7858995
|
intron_variant |
0.877[CEU]; 0.824[TSI]; 0.809[JPT]
|
rs10122150
|
intron_variant |
1.0[CEU]; 0.946[CHB]; 0.854[JPT]
|
rs7858984
|
intron_variant |
0.832[CEU]
|
rs4740191
|
intron_variant |
1.0[CEU]; 0.952[CHB]; 0.862[JPT]
|
rs4740192
|
intron_variant |
0.912[CEU]; 1.0[CHB]; 0.862[JPT]
|