ADHDgene Database

SNP Report

Basic Info

Name	rs6597539 dbSNP Ensembl
Location	chr9:134826121(Fwd)
Variant Alleles	A/C
Ancestral Allele	C
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000292035; ENST00000357028)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Yang L, 2013			P-value=0.0000998 P-value=0.0000998	The SNPs associated with P values of 1E-5 or lower The SNPs associated with P values of 1E-5 or lower	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
MED27	mediator complex subunit 27	9q34.13	1(0/1/0)

SNPs in LD with rs6597539 (count: 12) View in gBrowse (chr9:134788048..134844839 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs10122150	intron_variant	1.0[CEU]; 0.946[CHB]; 0.854[JPT]
rs4740191	intron_variant	1.0[CEU]; 0.952[CHB]; 0.862[JPT]
rs4740192	intron_variant	0.912[CEU]; 1.0[CHB]; 0.862[JPT]
rs7858995	intron_variant	0.877[CEU]; 0.824[TSI]; 0.809[JPT]
rs11243562	intron_variant	0.84[CEU]; 0.849[TSI]; 0.818[CHD]; 0.809[JPT]; 0.815[GIH]; 0.829[MEX]
rs4740333	intron_variant	0.873[CEU]; 0.801[JPT]
rs4128957	intron_variant	1.0[CEU]; 1.0[TSI]; 0.952[CHB]; 0.976[CHD]; 0.862[JPT]; 0.881[GIH]; 0.957[MEX]
rs7858984	intron_variant	0.832[CEU]
rs7032759	intron_variant	1.0[CEU]; 1.0[TSI]; 0.881[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.935[LWK]; 0.915[MEX]
rs12555726	intron_variant	0.877[CEU]; 0.824[TSI]; 0.809[JPT]
rs10901112	intron_variant	0.84[CEU]; 0.801[TSI]; 0.809[JPT]
rs11243585	intron_variant	0.952[CHB]; 0.883[CHD]; 0.862[JPT]; 0.862[GIH]