ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs6469849 dbSNP Ensembl
Location	chr8:120857169(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000313655)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Yang L, 2013			P-value=0.0000738 P-value=0.0000738	The SNPs associated with P values of 1E-5 or lower The SNPs associated with P values of 1E-5 or lower	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DSCC1	DNA replication and sister chromatid cohesion 1	8q24.12	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs6469849 (count: 86) View in gBrowse (chr8:120712611..120862080 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 86)

rs_ID	Functional Annotation	r²[population]
rs1055130	missense_variant; upstream_gene_variant	0.865[JPT]
rs10505374	downstream_gene_variant; intron_variant; NMD_transcript_variant	1.0[CEU]; 0.817[CHB]; 0.951[JPT]
rs7825803	upstream_gene_variant	0.912[TSI]; 0.858[CHB]; 0.927[CHD]; 1.0[JPT]; 0.84[MEX]
rs2326377	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.904[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.815[LWK]; 0.955[MEX]; 0.938[MKK]; 1.0[YRI]
rs12707880	downstream_gene_variant; intron_variant; NMD_transcript_variant	1.0[CEU]; 0.952[CHB]; 1.0[JPT]; 1.0[YRI]
rs7833490	intron_variant; NMD_transcript_variant	0.866[CHB]; 0.952[JPT]
rs4871578	intron_variant; upstream_gene_variant	1.0[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs7012791	downstream_gene_variant	0.912[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]; 0.84[MEX]
rs1567359	intron_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs10102038		0.946[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs6469841		0.904[CHB]; 1.0[JPT]
rs7017279	intron_variant	0.899[CEU]; 0.933[TSI]; 1.0[CHB]; 0.93[CHD]; 1.0[JPT]; 0.877[MEX]
rs1055133	3_prime_UTR_variant; upstream_gene_variant	0.866[CHB]; 0.952[JPT]
rs1055131	3_prime_UTR_variant; upstream_gene_variant	0.864[CHB]; 0.952[JPT]
rs7813651	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs1433951	intron_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs1567358	intron_variant	0.866[CHB]; 0.952[JPT]
rs16893027		0.946[CEU]; 1.0[TSI]; 0.843[ASW]; 0.904[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 1.0[MEX]; 0.872[MKK]; 1.0[YRI]
rs1828238	downstream_gene_variant; intron_variant	1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs10110601	intron_variant	1.0[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs4871528		0.891[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]; 0.84[MEX]
rs2289011	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.904[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.904[LWK]; 1.0[MEX]; 0.938[MKK]; 1.0[YRI]
rs1976575	downstream_gene_variant; intron_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs2164022		0.865[JPT]
rs16893113	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs4871629	downstream_gene_variant; intron_variant	0.866[CHB]; 0.952[JPT]
rs7837213	intron_variant; nc_transcript_variant	0.912[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]
rs6997976		0.912[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]; 0.84[MEX]
rs10101278	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.953[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.904[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
rs9297604	intron_variant; nc_transcript_variant	0.912[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]
rs4871648	intron_variant; NMD_transcript_variant	0.866[CHB]; 0.952[JPT]
rs7011974	downstream_gene_variant; intron_variant; nc_transcript_variant	0.904[CHB]; 1.0[JPT]
rs6469846	downstream_gene_variant; intron_variant	0.866[CHB]; 0.952[JPT]
rs14027	3_prime_UTR_variant; upstream_gene_variant	1.0[CEU]; 0.977[TSI]; 0.953[CHB]; 0.952[CHD]; 1.0[JPT]; 0.877[MEX]
rs7017010	intron_variant; upstream_gene_variant	0.866[CHB]; 0.952[JPT]
rs10103886	upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs7813680	intron_variant	0.908[CHB]; 0.952[JPT]
rs9693207	downstream_gene_variant; intron_variant; nc_transcript_variant	0.912[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]
rs7839110	intron_variant; upstream_gene_variant	0.866[CHB]; 0.952[JPT]
rs7829198	intron_variant; NMD_transcript_variant	0.865[JPT]
rs7833112	intron_variant; upstream_gene_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs7813438	downstream_gene_variant; intron_variant; upstream_gene_variant	0.866[CHB]; 0.952[JPT]
rs4871642	intron_variant; NMD_transcript_variant	0.946[CEU]; 1.0[TSI]; 1.0[ASW]; 0.953[CHB]; 1.0[CHD]; 0.907[JPT]; 0.85[GIH]; 0.904[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
rs4380974	downstream_gene_variant	0.865[JPT]
rs13257002	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[YRI]
rs9297605	missense_variant; nc_transcript_variant; non_coding_exon_variant	0.865[JPT]
rs16893025		0.946[CEU]; 1.0[TSI]; 0.843[ASW]; 0.904[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.957[MEX]; 0.872[MKK]; 1.0[YRI]
rs16893077	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.904[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.815[LWK]; 0.938[MKK]; 1.0[YRI]
rs10108071	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.865[JPT]
rs1433953		0.946[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs2043430	intron_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs2326378	intron_variant; nc_transcript_variant; upstream_gene_variant	0.911[TSI]; 0.902[CHB]; 0.952[CHD]; 1.0[JPT]
rs7821501	downstream_gene_variant; intron_variant	0.866[CHB]; 0.952[JPT]
rs2048239	intron_variant; nc_transcript_variant	1.0[CEU]; 0.902[CHB]; 1.0[JPT]; 1.0[YRI]
rs4870931	downstream_gene_variant	0.861[JPT]
rs4871634	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.953[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.904[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
rs7009073	intron_variant; upstream_gene_variant	0.898[CHB]; 1.0[JPT]
rs2043431	intron_variant; nc_transcript_variant	0.904[CHB]; 1.0[JPT]
rs13262434	intron_variant; nc_transcript_variant	0.946[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs10095282	upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs7827482	intron_variant; NMD_transcript_variant	0.866[CHB]; 0.952[JPT]
rs13255850		0.946[CEU]; 0.903[CHB]; 0.951[JPT]; 1.0[YRI]
rs4871595	intron_variant	0.866[CHB]; 0.952[JPT]
rs10086913	intron_variant; nc_transcript_variant; upstream_gene_variant	0.865[JPT]
rs16893101	intron_variant; nc_transcript_variant	1.0[CEU]; 0.904[CHB]; 1.0[JPT]
rs13261032	intron_variant; nc_transcript_variant	1.0[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs6989559	intron_variant; NMD_transcript_variant	0.866[CHB]; 0.952[JPT]
rs13268676	downstream_gene_variant; intron_variant	0.866[CHB]; 0.952[JPT]
rs10096846	intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	0.911[TSI]; 0.904[CHB]; 0.907[CHD]; 1.0[JPT]
rs12542706	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.902[CHB]; 1.0[JPT]
rs13272214	intron_variant	0.899[CHB]; 0.946[JPT]
rs4871577	intron_variant; upstream_gene_variant	0.865[JPT]
rs13253139		0.912[TSI]; 0.904[CHB]; 0.952[CHD]; 1.0[JPT]; 0.84[MEX]
rs7837589	downstream_gene_variant; intron_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs13252708		0.904[CHB]; 1.0[JPT]
rs7832755	downstream_gene_variant; intron_variant; upstream_gene_variant	0.865[JPT]
rs12707876	downstream_gene_variant	0.903[CHB]; 1.0[JPT]
rs12543087	downstream_gene_variant; intron_variant	1.0[CEU]; 0.902[CHB]; 1.0[JPT]; 1.0[YRI]
rs2634	intron_variant; NMD_transcript_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs16893140	intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	1.0[CEU]; 0.897[CHB]; 1.0[JPT]
rs6983932	downstream_gene_variant; intron_variant	0.813[TSI]; 1.0[CHB]; 0.93[CHD]; 1.0[JPT]
rs13265683	downstream_gene_variant	0.946[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs13270831	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 0.904[CHB]; 1.0[JPT]; 1.0[YRI]
rs10109951	intron_variant; NMD_transcript_variant	1.0[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs1469755	downstream_gene_variant	0.871[CEU]; 0.825[CHB]; 1.0[JPT]
rs6469853	downstream_gene_variant; intron_variant	0.83[TSI]; 1.0[CHB]; 0.907[CHD]; 1.0[JPT]; 0.875[MEX]