ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs6330 dbSNP Ensembl
Location chr1:115829313(Fwd)
Variant Alleles G/A
Ancestral Allele G
Functional Annotation intron_variant; missense_variant; nc_transcript_variant.
Polyphen Annotation: benign(ENST00000369512; LRG_260t1)
SIFT Annotation: tolerated(ENST00000369512; LRG_260t1)
Consequence to Transcript intron_variant(ENST00000425449)
missense_variant(ENST00000369512; LRG_260t1)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Syed Z, 2007 T/C C Allelic TDT P-value=0.05 Allelic TDT P-value=0.05 TDT analysis demonstrated borderline significant overtransmi...... TDT analysis demonstrated borderline significant overtransmission of the C allele of rs6330 More... Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)

SNPs in LD with rs6330 (count: 4) View in gBrowse (chr1:115809848..115830631 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)