ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs600753 dbSNP Ensembl
Location chr15:55759193(Fwd)
Variant Alleles T/C
Ancestral Allele T
Functional Annotation 3_prime_UTR_variant; intron_variant; missense_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant.
Polyphen Annotation: benign(ENST00000321149; ENST00000348518; ENST00000380679; ENST00000448430; ENST00000457155)
SIFT Annotation: tolerated(ENST00000321149; ENST00000348518; ENST00000380679; ENST00000448430; ENST00000457155)
Consequence to Transcript 3_prime_UTR_variant(ENST00000522437)
missense_variant(ENST00000321149; ENST00000348518; ENST00000380679; ENST00000448430; ENST00000457155)
nc_transcript_variant(ENST00000565113; ENST00000568310)
NMD_transcript_variant(ENST00000522437; ENST00000524160)
non_coding_exon_variant(ENST00000565113; ENST00000568310)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Wigg KG, 2008 G/A TDT P-value=0.492, X2=0.472 TDT P-value=0.492, X2=0.472 no evidence for association no evidence for association Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)

SNPs in LD with rs600753 (count: 18) View in gBrowse (chr15:55653031..55781998 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 18)