ADHDgene Database

SNP Report

Basic Info

Name	rs4771122 dbSNP Ensembl
Location	chr13:28020180(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000381116; ENST00000381120; ENST00000405591; ENST00000431572; ENST00000460973; ENST00000461838; ENST00000464753; ENST00000471771; ENST00000484342; ENST00000485650; ENST00000485959; ENST00000493719) nc_transcript_variant(ENST00000460973; ENST00000461838; ENST00000464753; ENST00000471771; ENST00000484342; ENST00000485650; ENST00000485959; ENST00000493719) upstream_gene_variant(ENST00000483903)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Albayrak O., 2013			ADHD risk, P-value=0.78; Association to ADHD subphenotypes i...... ADHD risk, P-value=0.78; Association to ADHD subphenotypes in the German sample, inattention, P-value=0.04, hyperactivity/impulsivity P-value=0.97; Association to ADHD subphenotypes in ADHD meta-analysis data, inattention, P-value=0.31, hyperactivity/impulsivity P-value=0.28, inattention and hyperactivity/impulsivity, P-value=0.19 More...	The BMI SNP risk alleles were associated with the quantitati...... The BMI SNP risk alleles were associated with the quantitative trait inattention with uncorrected P-values below 0.05. More...	Significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
MTIF3	mitochondrial translational initiation factor 3	13q12.2	1(1/0/0)

SNPs in LD with rs4771122 (count: 10) View in gBrowse (chr13:28000282..28047269 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs1475220		0.845[CEU]
rs7988412	intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.854[CEU]
rs1006353		0.813[CEU]
rs9579083	intron_variant; nc_transcript_variant; upstream_gene_variant	0.905[CEU]
rs1885988	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.854[CEU]
rs1885989	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.854[CEU]
rs7992289		0.858[CEU]
rs7669	downstream_gene_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant; upstream_gene_variant	0.854[CEU]
rs1475221		0.852[CEU]
rs1475219		0.852[CEU]