ADHDgene Database

SNP Report

Basic Info

Name	rs42427 dbSNP Ensembl
Location	Chr5:112176325(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; synonymous_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000508624) NMD_transcript_variant(ENST00000508624; ENST00000520401) downstream_gene_variant(ENST00000507379; ENST00000514164; ENST00000502371; ENST00000512211) intron_variant(ENST00000520401) synonymous_variant(ENST00000257430; ENST00000457016; ENST00000508376; LRG_130_t1; LRG_130_t3; LRG_130_t2)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
APC	adenomatous polyposis coli	5q21-q22

SNPs in LD with rs42427 (count: 1) View in gBrowse (chr5:112176325..112242968 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs469727	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/0/1)	0.842[CEU]; 0.85[CHD]; 0.873[GIH]; 0.813[JPT]; 0.867[MEX]