ADHDgene Database

SNP Report

Basic Info

Name	rs3817678 dbSNP Ensembl
Location	ChrX:49047325(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000479808) NMD_transcript_variant(ENST00000376303) downstream_gene_variant(ENST00000469389; ENST00000466635) intron_variant(ENST00000376303; ENST00000472598; ENST00000263233; ENST00000538567) upstream_gene_variant(ENST00000417014; ENST00000376310; ENST00000376317; ENST00000538114)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SYP	synaptophysin	Xp11.23-p11.22	3(3/0/0)

Approved Symbol	Approved Name	Location
PRICKLE3	prickle homolog 3 (Drosophila)	Xp11.23

SNPs in LD with rs3817678 (count: 2) View in gBrowse (chrX:49047325..49060227 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs5906754	downstream_gene_variant; upstream_gene_variant	2(2/0/0)	1.0[ASW]; 0.845[CEU]; 1.0[CHB]; 0.928[CHD]; 1.0[JPT]; 0.831[LWK]; 0.805[MKK]; 1.0[YRI]
rs2293945	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	1(1/0/0)	1.0[ASW]; 0.945[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]