ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs3817334 dbSNP Ensembl
Location	chr11:47650993(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000533571) intron_variant(ENST00000302503; ENST00000525649; ENST00000530428; ENST00000539759; ENST00000542981) nc_transcript_variant(ENST00000525649; ENST00000539759) upstream_gene_variant(ENST00000534074)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Albayrak O., 2013			ADHD risk, P-value=0.09, corrected P-value=1, OR=1.14; Assoc...... ADHD risk, P-value=0.09, corrected P-value=1, OR=1.14; Association to ADHD subphenotypes in the German sample, inattention, P-value=0.35, hyperactivity/impulsivity P-value=0.19, Association to ADHD subphenotypes in ADHD meta-analysis data, inattention, P-value=0.47, hyperactivity/impulsivity P-value=0.64, inattention and hyperactivity/impulsivity, P-value=0.8 More...	No significant association was reported in this study. No significant association was reported in this study.	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
MTCH2	mitochondrial carrier 2	11p11.2	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs3817334 (count: 25) View in gBrowse (chr11:47454972..47807774 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 25)

rs_ID	Functional Annotation	r²[population]
rs2868459	downstream_gene_variant	0.947[CHB]; 1.0[JPT]
rs1064608	downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 1.0[JPT]
rs7105282	downstream_gene_variant; intron_variant	0.853[CEU]; 0.901[CHB]; 0.859[JPT]
rs10838757	downstream_gene_variant; intron_variant; nc_transcript_variant	0.853[CEU]; 0.95[CHB]; 1.0[CHD]; 0.952[JPT]; 0.811[GIH]
rs7928842	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.865[YRI]
rs12419692		0.853[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.809[GIH]; 0.826[MEX]
rs34958982	intron_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 0.971[CHD]; 1.0[JPT]; 0.809[GIH]; 0.826[MEX]
rs7927771	intron_variant; nc_transcript_variant	0.853[CEU]
rs11604680	downstream_gene_variant	0.949[CHB]; 1.0[JPT]
rs4752856	intron_variant; nc_transcript_variant	0.853[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.866[GIH]; 0.826[MEX]
rs12798346	intron_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 0.971[CHD]; 0.951[JPT]; 0.809[GIH]; 0.826[MEX]
rs10838747	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.851[CEU]; 1.0[CHB]; 0.952[JPT]
rs12794570	intron_variant; nc_transcript_variant	0.81[CEU]; 1.0[CHB]; 1.0[JPT]
rs2290850	intron_variant; nc_transcript_variant	0.853[CEU]; 0.901[CHB]; 0.971[CHD]; 0.853[JPT]; 0.811[GIH]
rs9909	3_prime_UTR_variant; downstream_gene_variant	0.85[CEU]; 0.901[CHB]; 0.898[JPT]
rs10838738	intron_variant; nc_transcript_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.836[GIH]; 0.826[MEX]
rs3817335	downstream_gene_variant; intron_variant; nc_transcript_variant	0.85[CEU]; 1.0[CHB]; 1.0[JPT]
rs4752845	intron_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 1.0[JPT]
rs12787112	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.847[CEU]; 1.0[CHB]; 0.952[JPT]
rs10838748	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 1.0[CHD]; 0.952[JPT]; 0.837[GIH]; 0.826[MEX]
rs4752857	intron_variant; nc_transcript_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHB]; 1.0[JPT]
rs7947730	intron_variant; nc_transcript_variant	0.853[CEU]; 0.901[CHB]; 1.0[CHD]; 0.853[JPT]; 0.811[GIH]
rs7124681	intron_variant	1.0[CEU]; 0.977[TSI]; 0.852[ASW]; 0.948[CHB]; 0.943[CHD]; 1.0[JPT]; 0.918[GIH]; 1.0[LWK]; 0.954[MEX]; 0.924[MKK]; 1.0[YRI]
rs17788930	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.853[CEU]; 0.95[CHB]; 1.0[CHD]; 0.952[JPT]; 0.811[GIH]
rs1317149	downstream_gene_variant	0.851[CEU]; 1.0[CHB]; 0.913[CHD]; 0.949[JPT]; 0.818[MEX]