SNP Report

Basic Info
Name |
rs267418
dbSNP
Ensembl
|
Location |
chr5:174880645(Fwd) |
Variant Alleles |
G/C |
Ancestral Allele |
G |
Functional Annotation |
upstream_gene_variant.
|
Consequence to Transcript |
upstream_gene_variant(ENST00000459518) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 0)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 17)

rs_ID |
Functional Annotation |
r2[population] |
rs267416
|
upstream_gene_variant |
0.847[CEU]; 0.904[CHB]; 0.907[CHD]; 0.952[JPT]; 0.818[LWK]; 0.875[YRI]
|
rs931939
|
|
0.814[CEU]; 0.83[TSI]; 0.953[CHB]; 0.953[CHD]; 1.0[JPT]; 0.921[GIH]
|
rs267400
|
upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs267405
|
|
0.924[CEU]; 0.903[CHB]; 0.95[JPT]; 0.875[YRI]
|
rs267406
|
|
0.924[CEU]; 1.0[CHB]; 1.0[JPT]; 0.875[YRI]
|
rs267409
|
|
0.924[CEU]; 0.927[TSI]; 1.0[CHB]; 0.977[CHD]; 1.0[JPT]; 0.948[GIH]
|
rs1508763
|
|
0.848[CEU]; 0.83[TSI]; 0.953[CHB]; 0.953[CHD]; 1.0[JPT]; 0.948[GIH]
|
rs1508761
|
|
0.848[CEU]; 0.904[CHB]; 1.0[JPT]
|
rs703748
|
downstream_gene_variant |
0.902[JPT]
|
rs267407
|
|
0.924[CEU]; 0.976[TSI]; 1.0[ASW]; 1.0[CHB]; 0.977[CHD]; 1.0[JPT]; 0.974[GIH]; 0.809[LWK]; 0.809[MKK]; 0.875[YRI]
|
rs931938
|
|
0.873[CEU]; 0.95[CHB]; 1.0[JPT]
|
rs2662180
|
|
0.907[CHD]; 1.0[JPT]; 0.897[GIH]
|
rs1508765
|
|
0.848[CEU]; 0.899[CHB]; 1.0[JPT]
|
rs1355077
|
|
0.888[CEU]; 0.927[TSI]; 0.953[CHB]; 0.953[CHD]; 1.0[JPT]; 0.974[GIH]
|
rs931940
|
|
0.953[CHB]; 1.0[JPT]
|
rs6862721
|
|
0.905[JPT]
|
rs2662179
|
|
0.906[CHB]; 1.0[JPT]
|