ADHDgene Database

SNP Report

Basic Info

Name	rs267418 dbSNP Ensembl
Location	chr5:174880645(Fwd)
Variant Alleles	G/C
Ancestral Allele	G
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000459518)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Nyman ES, 2007			No available information. No available information.	No evidence of association was seen. No evidence of association was seen.	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs267418 (count: 17) View in gBrowse (chr5:174866036..174895874 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs6862721		0.905[JPT]
rs267406		0.924[CEU]; 1.0[CHB]; 1.0[JPT]; 0.875[YRI]
rs1508765		0.848[CEU]; 0.899[CHB]; 1.0[JPT]
rs931940		0.953[CHB]; 1.0[JPT]
rs267416	upstream_gene_variant	0.847[CEU]; 0.904[CHB]; 0.907[CHD]; 0.952[JPT]; 0.818[LWK]; 0.875[YRI]
rs2662180		0.907[CHD]; 1.0[JPT]; 0.897[GIH]
rs1508761		0.848[CEU]; 0.904[CHB]; 1.0[JPT]
rs267409		0.924[CEU]; 0.927[TSI]; 1.0[CHB]; 0.977[CHD]; 1.0[JPT]; 0.948[GIH]
rs2662179		0.906[CHB]; 1.0[JPT]
rs267407		0.924[CEU]; 0.976[TSI]; 1.0[ASW]; 1.0[CHB]; 0.977[CHD]; 1.0[JPT]; 0.974[GIH]; 0.809[LWK]; 0.809[MKK]; 0.875[YRI]
rs931939		0.814[CEU]; 0.83[TSI]; 0.953[CHB]; 0.953[CHD]; 1.0[JPT]; 0.921[GIH]
rs267405		0.924[CEU]; 0.903[CHB]; 0.95[JPT]; 0.875[YRI]
rs703748	downstream_gene_variant	0.902[JPT]
rs1508763		0.848[CEU]; 0.83[TSI]; 0.953[CHB]; 0.953[CHD]; 1.0[JPT]; 0.948[GIH]
rs1355077		0.888[CEU]; 0.927[TSI]; 0.953[CHB]; 0.953[CHD]; 1.0[JPT]; 0.974[GIH]
rs267400	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs931938		0.873[CEU]; 0.95[CHB]; 1.0[JPT]