ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2394538 dbSNP Ensembl
Location chr10:71033697(Fwd)
Variant Alleles T/C
Ancestral Allele T
Functional Annotation intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000360289; ENST00000448642; ENST00000450646; ENST00000464803; ENST00000476368; ENST00000479594; ENST00000480047; ENST00000483077; LRG_365t1)
nc_transcript_variant(ENST00000464803; ENST00000476368; ENST00000479594; ENST00000480047; ENST00000483077)
upstream_gene_variant(ENST00000483054; ENST00000488644)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2010 (b) T:C GLM P-value=2.77E-05, meta-analysis P-value=0.03182 GLM P-value=2.77E-05, meta-analysis P-value=0.03182 One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)

SNPs in LD with rs2394538 (count: 2) View in gBrowse (chr10:71033697..71041527 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)