ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2288648 dbSNP Ensembl
Location chr7:150774308(Fwd)
Variant Alleles G/A
Ancestral Allele A
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant.
Polyphen Annotation: benign(ENST00000297532; ENST00000353841; ENST00000482571)
SIFT Annotation: tolerated(ENST00000297532; ENST00000353841; ENST00000482571)
Consequence to Transcript 3_prime_UTR_variant(ENST00000540185)
downstream_gene_variant(ENST00000297533; ENST00000310317; ENST00000392818; ENST00000392826; ENST00000413384; ENST00000460010; ENST00000461735; ENST00000461979; ENST00000462940; ENST00000469467; ENST00000472204; ENST00000476627; ENST00000478477; ENST00000478883; ENST00000482202; ENST00000482697; ENST00000485713; ENST00000488752; ENST00000492838; ENST00000496663)
missense_variant(ENST00000297532; ENST00000353841; ENST00000482571)
nc_transcript_variant(ENST00000459800; ENST00000460980; ENST00000466855; ENST00000467237; ENST00000469237; ENST00000482806; ENST00000483953; ENST00000489884)
non_coding_exon_variant(ENST00000459800; ENST00000460980; ENST00000466855; ENST00000467237; ENST00000469237; ENST00000482806; ENST00000483953; ENST00000489884)
upstream_gene_variant(ENST00000465272; ENST00000485974)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Laurin N, 2008(a) T/C P-value=0.496 in the catergorical analysis, P-value>0.05 in ...... P-value=0.496 in the catergorical analysis, P-value>0.05 in the quantitative analysis More... no significant evidence of association no significant evidence of association Non-significant

SNP related genes (count: 3)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 3)


SNPs in LD with rs2288648 (count: 9) View in gBrowse (chr7:150773165..150805137 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)