ADHDgene Database

SNP Report

Basic Info

Name	rs2271308 dbSNP Ensembl
Location	Chr17:37817482(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000578577; ENST00000583884) downstream_gene_variant(ENST00000443521; ENST00000578232; ENST00000583718; ENST00000582874; ENST00000583582; ENST00000577248; ENST00000581894; ENST00000578254; ENST00000484773; ENST00000580331; ENST00000585214; ENST00000580551; ENST00000579479; ENST00000460894; ENST00000583419) intron_variant(ENST00000580611; ENST00000544210; ENST00000578577; ENST00000488876; ENST00000394250; ENST00000578384; ENST00000583639; ENST00000481171; ENST00000471896; ENST00000336308; ENST00000583884; ENST00000585269; ENST00000584850) nc_transcript_variant(ENST00000481171; ENST00000578686; ENST00000488876; ENST00000583639; ENST00000578384; ENST00000585269; ENST00000471896; ENST00000584850) non_coding_exon_variant(ENST00000578686) upstream_gene_variant(ENST00000578283; ENST00000309889; LRG_210_t1)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location
STARD3	StAR-related lipid transfer (START) domain containing 3	17q11-q12
TCAP	titin-cap (telethonin)	17q12

SNPs in LD with rs2271308 (count: 5) View in gBrowse (chr17:37781849..37828496 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.864[CHB]; 0.85[CHD]; 0.905[JPT]; 0.872[TSI]
rs907094	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.829[CHB]; 0.839[CHD]; 0.863[GIH]; 0.822[JPT]
rs879606	downstream_gene_variant; upstream_gene_variant	1(0/1/0)	0.829[CHB]; 0.81[CHD]; 0.822[JPT]
rs3764352	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.829[CHB]; 0.839[CHD]; 0.863[GIH]; 0.822[JPT]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	1.0[ASW]; 1.0[CEU]; 0.954[CHB]; 0.975[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 0.974[TSI]; 1.0[YRI]