ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2193968 dbSNP Ensembl
Location	Chr5:52247233(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000505701; ENST00000504669; ENST00000282588; ENST00000506275; ENST00000503559) nc_transcript_variant(ENST00000504669; ENST00000505701; ENST00000506275; ENST00000503559)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	A/G		P-value=0.844 in the catergorical analysis, P-value>0.05 in ...... P-value=0.844 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ITGA1	integrin, alpha 1	5q11.1	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs2193968 (count: 22) View in gBrowse (chr5:52237991..52293087 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 1)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs1421927	intron_variant; nc_transcript_variant	1(0/1/0)	0.826[CHB]

LD-proxies (count: 21)

rs_ID	Functional Annotation	r²[population]
rs6895049	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[CHB]; 0.953[JPT]; 1.0[YRI]
rs10940285	downstream_gene_variant; intron_variant; nc_transcript_variant	0.955[LWK]; 0.895[YRI]
rs6882655	downstream_gene_variant; intron_variant; nc_transcript_variant	0.84[LWK]; 0.814[YRI]
rs12659969	downstream_gene_variant; intron_variant; nc_transcript_variant	0.842[CEU]
rs10805444	downstream_gene_variant; intron_variant; nc_transcript_variant	0.837[CEU]
rs1421942	NMD_transcript_variant; intron_variant	0.82[TSI]
rs3088365	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 0.952[JPT]; 1.0[LWK]; 0.909[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs26682	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.959[CEU]
rs1421928	intron_variant; nc_transcript_variant	0.826[CHB]
rs11742531	intron_variant; nc_transcript_variant	0.842[CEU]
rs35235	NMD_transcript_variant; intron_variant	0.96[CEU]; 0.952[TSI]
rs11739193	intron_variant; nc_transcript_variant	0.842[CEU]
rs6888620	intron_variant; nc_transcript_variant	0.826[CHB]
rs7718758	intron_variant; nc_transcript_variant	0.838[CHD]
rs1047483	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[CHB]; 0.953[JPT]; 1.0[YRI]
rs6890588	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 0.884[CEU]; 1.0[CHB]; 1.0[CHD]; 0.977[GIH]; 0.898[JPT]; 0.953[LWK]; 0.986[MKK]; 1.0[YRI]
rs11743233	intron_variant; nc_transcript_variant	0.837[CEU]
rs1047481	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 0.95[JPT]; 1.0[LWK]; 0.91[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs2406371	intron_variant; nc_transcript_variant	0.826[CHB]
rs10940281	intron_variant; nc_transcript_variant	0.826[CHB]
rs7035	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.955[LWK]; 0.895[YRI]