ADHDgene Database

SNP Report

Basic Info

Name	rs2032892 dbSNP Ensembl
Location	chr5:36677083(Fwd)
Variant Alleles	G/C
Ancestral Allele	G
Functional Annotation	intron_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant. Polyphen Annotation: benign(ENST00000265113; ENST00000381918) SIFT Annotation: tolerated(ENST00000265113; ENST00000381918)
Consequence to Transcript	intron_variant(ENST00000510740) missense_variant(ENST00000265113; ENST00000381918) nc_transcript_variant(ENST00000505376; ENST00000510740) non_coding_exon_variant(ENST00000505376) upstream_gene_variant(ENST00000506178)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Turic D, 2005(a)	C/G(E219D)		no P-value no P-value	no association no association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs2032892 (count: 3) View in gBrowse (chr5:36669854..36705875 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs7712125	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[JPT]
rs2033224	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[JPT]; 1.0[LWK]; 1.0[MKK]; 1.0[YRI]
rs16903276	intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[JPT]