ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs1938526 dbSNP Ensembl
Location	chr10:62300383(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000373827; ENST00000503366; ENST00000510382) nc_transcript_variant(ENST00000510382)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Schimmelmann, B. G.,2013			Nominal two-sided P-value=0.683 (OR=1.06;95%CI=0.79-1.41) Nominal two-sided P-value=0.683 (OR=1.06;95%CI=0.79-1.41)	No evidence for association was found with ADHD for the rema...... No evidence for association was found with ADHD for the remaining eight SNPs, which were found to be genome-wide significant for BD in international GWAS More...	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ANK3	ankyrin 3, node of Ranvier (ankyrin G)	10q21	2(0/2/0)

Genes from other sources (count: 0)

SNPs in LD with rs1938526 (count: 22) View in gBrowse (chr10:62146576..62433440 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 22)

rs_ID	Functional Annotation	r²[population]
rs12218617	intron_variant; nc_transcript_variant	0.839[MEX]
rs10821789	intron_variant; nc_transcript_variant	0.866[CEU]; 1.0[CHB]; 0.907[JPT]
rs10994443	intron_variant; nc_transcript_variant	0.893[MEX]
rs10994384	intron_variant	0.834[CHB]
rs2153522	intron_variant; nc_transcript_variant	0.815[CHD]
rs16915231	intron_variant; nc_transcript_variant	0.893[MEX]
rs10994415	intron_variant; nc_transcript_variant	0.806[CHB]; 0.908[JPT]
rs1938540	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10821792	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 1.0[CHD]; 0.953[JPT]; 1.0[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]
rs4948412	intron_variant	1.0[LWK]; 1.0[MKK]
rs2393640	intron_variant; nc_transcript_variant	0.815[CHD]
rs10994397	intron_variant; nc_transcript_variant	1.0[TSI]; 0.946[CHB]; 0.888[CHD]; 0.907[JPT]; 0.928[GIH]; 0.947[MEX]
rs10994359	intron_variant	1.0[TSI]; 1.0[ASW]; 0.896[CHB]; 0.915[CHD]; 0.928[GIH]; 1.0[LWK]; 0.811[MEX]; 1.0[MKK]
rs10509136	intron_variant; nc_transcript_variant	0.844[MEX]
rs2393641	intron_variant; nc_transcript_variant	0.907[JPT]
rs10994429	intron_variant; nc_transcript_variant	1.0[ASW]; 0.844[MEX]
rs2028564	intron_variant; nc_transcript_variant	0.844[MEX]
rs2154393	intron_variant; nc_transcript_variant	0.906[JPT]
rs10994404	intron_variant; nc_transcript_variant	0.866[CEU]; 1.0[CHB]; 0.904[JPT]
rs16915196	intron_variant; nc_transcript_variant	0.844[MEX]
rs12412135	intron_variant; nc_transcript_variant	0.866[CEU]; 1.0[CHB]; 0.907[JPT]
rs9633553	intron_variant; nc_transcript_variant	0.825[CHB]; 0.859[JPT]