ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1801131 dbSNP Ensembl
Location chr1:11854476(Fwd)
Variant Alleles T/G
Ancestral Allele T
Functional Annotation downstream_gene_variant; missense_variant.
Polyphen Annotation: benign(ENST00000376583; ENST00000376585; ENST00000376590; ENST00000376592)
SIFT Annotation: tolerated(ENST00000376583; ENST00000376585; ENST00000376590; ENST00000376592)
Consequence to Transcript downstream_gene_variant(ENST00000312793; ENST00000433342; ENST00000444493; ENST00000449278; ENST00000482358)
missense_variant(ENST00000376583; ENST00000376585; ENST00000376590; ENST00000376592)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Ergul, E., 2012 A/C allelic P-value=0.229, X2=2.946, df=2; genotypic ...... allelic P-value=0.229, X2=2.946, df=2; genotypic P-value=0.555, X2=0.349, df=1, OR (95% CI)=0.869 (0.545-1.386) for AA; P-value=0.132, X2=2.264, df=1, OR (95% CI)=1.416 (0.899-2.229); for AC; P-value=0.183, X2=1.772, df=1, OR (95% CI)=0.614 (0.297-1.267) for CC More... There were no significant allele or genotype differences bet...... There were no significant allele or genotype differences between cases and controls. More... Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs1801131 (count: 25) View in gBrowse (chr1:11833366..11899033 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 25)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014