ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs17689952 dbSNP Ensembl
Location chr4:166939154(Fwd)
Variant Alleles A/G
Ancestral Allele A
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000061240; ENST00000507499; ENST00000509505; ENST00000513213)
NMD_transcript_variant(ENST00000509505)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Lantieri F, 2010 G:A Binomial P-value=0.41, OR=0.97 for whole sample; Binomial P-...... Binomial P-value=0.41, OR=0.97 for whole sample; Binomial P-value=0.16, OR=0.85 for C-subtype More... no significant association no significant association Non-significant
Neale BM, 2008 G:A Uncorrected TDT P-value=4.16E-05 (OR=0.7219) Uncorrected TDT P-value=4.16E-05 (OR=0.7219) One of top 25 results in uncorrected TDT test One of top 25 results in uncorrected TDT test Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 1)


SNPs in LD with rs17689952 (count: 5) View in gBrowse (chr4:166926573..166948998 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)