ADHDgene Database

SNP Report

Basic Info

Name	rs16997358 dbSNP Ensembl
Location	chr20:51582072(Fwd)
Variant Alleles	A/T
Ancestral Allele	T
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	A:T		P-value=9.17E-06 P-value=9.17E-06	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 0)

SNPs in LD with rs16997358 (count: 7) View in gBrowse (chr20:51556035..51585125 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs16997340		1.0[CEU]; 0.884[TSI]; 1.0[ASW]; 0.945[CHB]; 1.0[CHD]; 1.0[JPT]; 0.895[GIH]; 0.973[LWK]; 0.898[MEX]; 1.0[MKK]; 0.944[YRI]
rs11908686	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11906596	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11905478		0.879[CEU]; 0.889[CHB]; 1.0[CHD]; 1.0[JPT]; 0.895[GIH]; 0.853[MEX]
rs16997342		1.0[CEU]; 0.884[TSI]; 0.916[ASW]; 0.945[CHB]; 1.0[CHD]; 1.0[JPT]; 0.895[GIH]; 0.918[LWK]; 0.894[MEX]
rs16997309		0.879[CEU]; 0.945[CHB]; 1.0[JPT]
rs13040133	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]