SNP Report

Basic Info
Name |
rs16997358
dbSNP
Ensembl
|
Location |
chr20:51582072(Fwd) |
Variant Alleles |
A/T |
Ancestral Allele |
T |
No. of Studies |
1 (significant: 0; non-significant: 0; trend: 1) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 0)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 7)

rs_ID |
Functional Annotation |
r2[population] |
rs16997309
|
|
0.879[CEU]; 0.945[CHB]; 1.0[JPT]
|
rs11905478
|
|
0.879[CEU]; 0.889[CHB]; 1.0[CHD]; 1.0[JPT]; 0.895[GIH]; 0.853[MEX]
|
rs11908686
|
upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs13040133
|
upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs16997342
|
|
1.0[CEU]; 0.884[TSI]; 0.916[ASW]; 0.945[CHB]; 1.0[CHD]; 1.0[JPT]; 0.895[GIH]; 0.918[LWK]; 0.894[MEX]
|
rs11906596
|
upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs16997340
|
|
1.0[CEU]; 0.884[TSI]; 1.0[ASW]; 0.945[CHB]; 1.0[CHD]; 1.0[JPT]; 0.895[GIH]; 0.973[LWK]; 0.898[MEX]; 1.0[MKK]; 0.944[YRI]
|