SNP Report

Basic Info
Name |
rs1412005
dbSNP
Ensembl
|
Location |
chr9:93409161(Fwd) |
Variant Alleles |
T/G |
Ancestral Allele |
G |
Functional Annotation |
upstream_gene_variant.
|
Consequence to Transcript |
upstream_gene_variant(ENST00000375765) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)

rs_ID |
Functional Annotation |
r2[population] |
rs1360471
|
|
1.0[CEU]; 1.0[TSI]; 0.827[ASW]; 1.0[CHB]; 0.9[CHD]; 0.907[JPT]; 0.921[GIH]; 0.911[LWK]; 0.914[MEX]; 1.0[MKK]; 0.929[YRI]
|
rs6479614
|
|
1.0[CEU]; 1.0[CHB]; 0.952[JPT]; 0.929[YRI]
|
rs4744473
|
intron_variant |
0.821[CHB]
|
rs1466381
|
intron_variant |
0.809[CEU]; 0.869[TSI]; 0.92[GIH]
|
rs1331506
|
|
0.825[CEU]; 0.936[TSI]; 0.94[ASW]; 0.978[LWK]; 0.913[MEX]; 0.986[MKK]; 0.964[YRI]
|
rs7860740
|
|
1.0[CEU]; 1.0[TSI]; 0.882[ASW]; 1.0[CHB]; 0.9[CHD]; 0.952[JPT]; 0.947[GIH]; 0.956[LWK]; 0.956[MEX]; 0.929[YRI]
|
rs7029114
|
|
0.809[CEU]
|
rs1831521
|
upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs1331502
|
intron_variant |
0.955[CHB]; 0.953[JPT]
|
rs1819453
|
|
0.809[CEU]; 0.934[TSI]; 0.866[GIH]
|
rs7854744
|
upstream_gene_variant |
0.955[CHB]; 0.952[JPT]
|
rs12684237
|
|
1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 0.975[CHD]; 1.0[JPT]; 0.973[GIH]; 0.914[MEX]
|
rs1017754
|
upstream_gene_variant |
1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.811[GIH]; 0.801[MEX]; 0.833[YRI]
|
rs6479615
|
|
0.809[CEU]; 0.934[TSI]; 0.866[GIH]
|
rs1331494
|
|
0.809[CEU]
|