ADHDgene Database

SNP Report

Basic Info

Name	rs13188662 dbSNP Ensembl
Location	chr5:52091647(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000274311; ENST00000282588; ENST00000504086; ENST00000506949) nc_transcript_variant(ENST00000504086; ENST00000506949)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	A/G		P-value=0.16 in the catergorical analysis, P-value>0.05 in t...... P-value=0.16 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ITGA1	integrin, alpha 1	5q11.1	2(0/2/0)

Approved Symbol	Approved Name	Location
PELO	pelota homolog (Drosophila)	5q11.2

SNPs in LD with rs13188662 (count: 10) View in gBrowse (chr5:52066102..52117854 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs2938796	intron_variant; nc_transcript_variant	0.96[CEU]; 0.955[TSI]; 0.976[GIH]; 0.905[MEX]
rs13189629	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 0.934[CHD]; 0.93[JPT]; 1.0[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[YRI]
rs6883810	intron_variant; nc_transcript_variant	0.96[CEU]; 0.977[TSI]; 1.0[ASW]; 0.844[CHB]; 0.851[CHD]; 0.873[JPT]; 0.976[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
rs13158244	intron_variant; nc_transcript_variant	0.96[CEU]; 0.955[TSI]; 1.0[ASW]; 0.976[GIH]; 0.907[MEX]; 0.825[YRI]
rs12653042	intron_variant; nc_transcript_variant	0.825[YRI]
rs2454581	intron_variant; nc_transcript_variant	0.96[CEU]
rs10512992	intron_variant; nc_transcript_variant	0.894[CHB]; 0.93[JPT]; 1.0[LWK]
rs13182946	intron_variant; nc_transcript_variant	0.956[CEU]; 0.836[CHB]; 0.873[JPT]; 1.0[YRI]
rs7734166	intron_variant; nc_transcript_variant	0.93[JPT]
rs10940270	intron_variant; nc_transcript_variant; upstream_gene_variant	0.885[ASW]