ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs12800438 dbSNP Ensembl
Location	chr11:71171003(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000533612; ENST00000534634) intron_variant(ENST00000319023; ENST00000524949; ENST00000525200; ENST00000525245; ENST00000528509; ENST00000529120; ENST00000533769) nc_transcript_variant(ENST00000524949; ENST00000525245; ENST00000527538; ENST00000533769) NMD_transcript_variant(ENST00000525200; ENST00000528509; ENST00000529120) non_coding_exon_variant(ENST00000527538)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	A:G		P-value=2.23E-05 P-value=2.23E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
NADSYN1	NAD synthetase 1	11q13.4	1(0/0/1)

Genes from other sources (count: 0)

SNPs in LD with rs12800438 (count: 35) View in gBrowse (chr11:71119018..71221248 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 35)

rs_ID	Functional Annotation	r²[population]
rs11233747	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	1.0[CHB]; 1.0[JPT]
rs12797951	downstream_gene_variant; intron_variant	0.95[CEU]; 0.938[TSI]; 0.955[CHB]; 0.976[CHD]; 0.892[JPT]; 1.0[GIH]
rs1792226	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	0.82[TSI]
rs11600569	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs12808368	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs12419334	3_prime_UTR_variant	0.947[CEU]; 0.936[TSI]; 0.952[CHB]; 0.975[CHD]; 0.892[JPT]; 1.0[GIH]
rs2040323	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1629220	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	0.82[TSI]
rs11606033	downstream_gene_variant; intron_variant; upstream_gene_variant	0.95[CEU]; 0.863[CHB]; 1.0[JPT]
rs4423214	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs3763856	intron_variant; nc_transcript_variant; non_coding_exon_variant	0.858[CHD]; 0.879[GIH]
rs2276360	downstream_gene_variant; missense_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant	1.0[CEU]; 0.938[TSI]; 0.888[ASW]; 0.955[CHB]; 0.953[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]; 0.839[MKK]; 0.924[YRI]
rs1792229	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	0.82[TSI]
rs4944959	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 0.955[CHB]; 1.0[CHD]; 1.0[JPT]; 0.923[GIH]; 0.955[MEX]
rs4944062	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs7935125	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs3794060	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.955[MEX]
rs12806918	intron_variant; nc_transcript_variant; upstream_gene_variant	0.858[CHD]; 0.879[GIH]
rs1044482	intron_variant; missense_variant; splice_region_variant; synonymous_variant; upstream_gene_variant	0.946[CEU]; 0.856[CHB]; 0.937[JPT]
rs12790558	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2282621	intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.969[TSI]; 0.83[CHB]; 0.826[CHD]; 1.0[GIH]; 0.955[MEX]
rs7944926	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 0.955[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.955[MEX]
rs12793607	intron_variant; nc_transcript_variant	0.858[CHD]; 0.879[GIH]
rs4944957	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.969[TSI]; 0.953[CHB]; 0.975[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]
rs2282620	intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.83[CHB]
rs2276362	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.968[LWK]; 1.0[MEX]; 0.979[MKK]; 0.923[YRI]
rs12419279	downstream_gene_variant; upstream_gene_variant	1.0[CEU]; 0.952[CHB]; 0.821[JPT]
rs4945008	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	0.95[CEU]; 1.0[CHB]; 1.0[JPT]
rs4944958	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.955[CHB]; 1.0[JPT]
rs12791871	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 0.955[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.955[MEX]
rs7938885	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs4944044	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.821[CHB]
rs2852853	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.942[CEU]; 0.909[CHB]; 0.892[JPT]
rs2002064	downstream_gene_variant; intron_variant; upstream_gene_variant	0.82[TSI]
rs12785878	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 0.908[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.955[MEX]