ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs12505502 dbSNP Ensembl
Location chr4:91568023(Fwd)
Variant Alleles T/G
Ancestral Allele G
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000502478)
intron_variant(ENST00000333691; ENST00000432775; ENST00000505073; ENST00000509176; ENST00000513522)
NMD_transcript_variant(ENST00000505073; ENST00000513522)
upstream_gene_variant(ENST00000503421; ENST00000504150; ENST00000509109; ENST00000510519)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2008 G:T Uncorrected TDT P-value=6.21E-05 (OR=1.303); Corrected TDT P...... Uncorrected TDT P-value=6.21E-05 (OR=1.303); Corrected TDT P-value=5.62E-05 (OR=1.303) More... One of top 25 results in both uncorrected and corrected TDT ...... One of top 25 results in both uncorrected and corrected TDT test More... Non-significant
Lantieri F, 2010 G:T Binomial P-value=0.05, OR=1.18 for whole sample; Binomial P-...... Binomial P-value=0.05, OR=1.18 for whole sample; Binomial P-value=0.07, OR=1.22 for C-subtype More... significant in this sample, but not significant after correc...... significant in this sample, but not significant after correction for multiple tests More... Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs12505502 (count: 8) View in gBrowse (chr4:91566875..91584294 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)