SNP Report

Basic Info
Name |
rs12053018
dbSNP
Ensembl
|
Location |
chr2:226395276(Fwd) |
Variant Alleles |
A/C |
Ancestral Allele |
A |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000272907; ENST00000409269) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 13)

rs_ID |
Functional Annotation |
r2[population] |
rs16866626
|
intron_variant |
0.942[CEU]; 0.899[CHB]
|
rs718659
|
intron_variant |
0.953[CEU]; 0.951[TSI]; 0.908[CHB]; 0.884[CHD]; 0.977[GIH]
|
rs4673145
|
intron_variant |
0.953[CEU]; 0.951[TSI]; 0.908[CHB]; 0.884[CHD]; 0.977[GIH]
|
rs10498190
|
intron_variant |
0.953[CEU]; 0.906[CHB]
|
rs11695839
|
intron_variant |
0.907[CEU]; 0.951[TSI]; 1.0[CHB]; 1.0[CHD]; 0.944[JPT]; 1.0[GIH]
|
rs11688542
|
intron_variant |
0.951[CEU]; 0.906[CHB]
|
rs7578595
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.888[JPT]
|
rs936068
|
intron_variant |
0.844[CEU]; 0.898[CHB]
|
rs7576524
|
intron_variant |
0.952[CEU]; 0.903[CHB]
|
rs10933096
|
intron_variant |
1.0[CEU]; 0.975[TSI]; 1.0[CHB]; 1.0[CHD]; 0.944[JPT]; 1.0[GIH]
|
rs10804326
|
intron_variant |
1.0[CEU]; 0.975[TSI]; 1.0[CHB]; 1.0[CHD]; 0.944[JPT]; 1.0[GIH]
|
rs1431071
|
intron_variant |
0.835[CHD]
|
rs718660
|
intron_variant |
0.953[CEU]; 0.908[CHB]
|