SNP Report

Basic Info
Name |
rs11714060
dbSNP
Ensembl
|
Location |
chr3:143567207(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
G |
Functional Annotation |
5_prime_UTR_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant.
|
Consequence to Transcript |
5_prime_UTR_variant(ENST00000316549; ENST00000474151; ENST00000474727) nc_transcript_variant(ENST00000498717) NMD_transcript_variant(ENST00000474727) non_coding_exon_variant(ENST00000498717) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 34)

rs_ID |
Functional Annotation |
r2[population] |
rs1319100
|
downstream_gene_variant; upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.966[LWK]; 1.0[MEX]; 0.916[MKK]; 1.0[YRI]
|
rs6440200
|
|
1.0[CEU]
|
rs2361208
|
upstream_gene_variant |
1.0[CEU]; 1.0[YRI]
|
rs4839612
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs4839672
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs2221412
|
downstream_gene_variant |
1.0[CEU]
|
rs4839674
|
upstream_gene_variant |
1.0[CEU]
|
rs1394398
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs9841753
|
intron_variant; nc_transcript_variant |
1.0[MEX]
|
rs6440196
|
intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]
|
rs4286430
|
intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]
|
rs6780027
|
downstream_gene_variant |
1.0[CEU]; 1.0[TSI]
|
rs2361206
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs9824974
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]
|
rs6768702
|
downstream_gene_variant |
1.0[CEU]; 1.0[TSI]
|
rs6440195
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs6782974
|
nc_transcript_variant; non_coding_exon_variant |
1.0[CEU]; 1.0[TSI]
|
rs2011290
|
downstream_gene_variant |
1.0[CEU]
|
rs2885193
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs1394402
|
upstream_gene_variant |
1.0[CEU]; 1.0[TSI]
|
rs4839671
|
intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]
|
rs4499594
|
upstream_gene_variant |
1.0[CEU]
|
rs9289669
|
upstream_gene_variant |
1.0[CEU]; 1.0[TSI]
|
rs1979911
|
downstream_gene_variant; upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs1995529
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]
|
rs2361202
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs2885194
|
intron_variant; NMD_transcript_variant |
1.0[CEU]
|
rs2885195
|
upstream_gene_variant |
1.0[CEU]
|
rs1319101
|
downstream_gene_variant; upstream_gene_variant |
1.0[CEU]
|
rs10433436
|
downstream_gene_variant |
1.0[CEU]; 1.0[YRI]
|
rs2361207
|
intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]; 0.842[ASW]
|
rs9822158
|
intron_variant; NMD_transcript_variant |
1.0[MEX]
|
rs1995530
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[TSI]
|
rs7629598
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
1.0[CEU]; 1.0[YRI]
|