SNP Report

Basic Info
Name |
rs10968576
dbSNP
Ensembl
|
Location |
chr9:28414339(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000379992) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 21)

rs_ID |
Functional Annotation |
r2[population] |
rs7858668
|
intron_variant |
0.866[CHB]; 0.926[JPT]
|
rs2183825
|
intron_variant |
1.0[CEU]; 0.901[TSI]; 0.824[JPT]; 1.0[MEX]
|
rs10733435
|
intron_variant |
0.861[CHB]; 0.93[JPT]
|
rs10757743
|
intron_variant |
0.868[CHB]; 0.927[JPT]
|
rs2183824
|
intron_variant |
1.0[CEU]; 0.824[JPT]
|
rs10968577
|
intron_variant |
1.0[CEU]; 0.811[JPT]
|
rs17773909
|
intron_variant |
0.861[CHB]; 0.868[JPT]
|
rs10968607
|
intron_variant |
0.865[CHB]; 0.93[JPT]
|
rs1576735
|
intron_variant |
0.868[CHB]; 0.867[JPT]
|
rs9298897
|
intron_variant |
0.868[CHB]; 0.868[JPT]
|
rs1412239
|
intron_variant |
1.0[CEU]; 0.933[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs7856495
|
intron_variant |
0.868[CHB]; 0.933[JPT]
|
rs7853160
|
intron_variant |
0.868[CHB]; 0.93[JPT]
|
rs1412235
|
intron_variant |
0.913[CEU]; 1.0[TSI]; 1.0[ASW]; 0.933[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs17773989
|
intron_variant |
0.862[CHB]; 0.868[JPT]
|
rs2150854
|
intron_variant |
0.824[JPT]
|
rs979525
|
intron_variant |
0.862[CHB]; 0.933[JPT]
|
rs1412234
|
intron_variant |
0.913[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs7040274
|
intron_variant |
0.846[JPT]
|
rs1576737
|
intron_variant |
0.868[CHB]; 0.933[JPT]
|
rs16912921
|
intron_variant |
1.0[CEU]; 0.901[TSI]; 0.824[JPT]; 1.0[MEX]
|