SNP Report

Basic Info

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 27)

rs_ID |
Functional Annotation |
r2[population] |
rs7259978
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.863[JPT]
|
rs10413037
|
upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 0.933[ASW]; 0.892[CHD]; 0.801[JPT]; 1.0[GIH]; 0.969[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs10414184
|
intron_variant; nc_transcript_variant |
0.839[YRI]
|
rs3746231
|
5_prime_UTR_variant; missense_variant |
1.0[CEU]; 1.0[CHB]; 0.861[JPT]; 0.865[YRI]
|
rs6510050
|
|
0.862[CHB]; 0.845[CHD]
|
rs12460702
|
intron_variant |
0.862[CHB]
|
rs3826970
|
downstream_gene_variant |
0.901[YRI]
|
rs8106734
|
intron_variant |
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.93[CHB]; 0.922[CHD]; 0.933[JPT]; 1.0[GIH]; 0.909[LWK]; 1.0[MEX]; 0.943[MKK]; 1.0[YRI]
|
rs10405008
|
intron_variant |
0.886[CEU]; 0.977[TSI]; 0.927[CHB]; 0.961[CHD]; 0.863[JPT]; 0.955[GIH]; 1.0[MEX]
|
rs10415639
|
upstream_gene_variant |
0.854[YRI]
|
rs10418480
|
intron_variant |
1.0[CEU]; 1.0[TSI]; 0.819[ASW]; 1.0[CHB]; 1.0[CHD]; 0.863[JPT]; 0.978[GIH]; 0.954[MEX]
|
rs10412975
|
downstream_gene_variant; upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 0.933[ASW]; 0.933[CHB]; 0.962[CHD]; 0.862[JPT]; 0.932[GIH]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 0.951[YRI]
|
rs12460381
|
intron_variant |
0.862[CHB]
|
rs10408146
|
|
0.862[CHB]; 0.844[CHD]
|
rs10413671
|
intron_variant |
0.951[CEU]; 1.0[CHB]; 0.923[JPT]; 1.0[YRI]
|
rs10427146
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.855[JPT]
|
rs8111661
|
intron_variant |
0.862[CHB]; 0.883[CHD]; 0.863[JPT]; 0.846[GIH]; 0.863[MEX]
|
rs10414299
|
downstream_gene_variant |
0.862[CHB]
|
rs4801452
|
downstream_gene_variant; upstream_gene_variant |
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 0.933[CHB]; 1.0[CHD]; 0.933[JPT]; 1.0[GIH]; 0.969[LWK]; 0.953[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs11084492
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.848[JPT]
|
rs7248000
|
intron_variant |
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 0.962[CHD]; 0.933[JPT]; 1.0[GIH]; 0.969[LWK]; 1.0[MEX]; 0.943[MKK]; 1.0[YRI]
|
rs10406954
|
intron_variant |
0.902[YRI]
|
rs10415216
|
upstream_gene_variant |
0.902[YRI]
|
rs13345715
|
|
0.862[CHB]
|
rs7252399
|
downstream_gene_variant; upstream_gene_variant |
0.862[CHB]; 0.845[CHD]; 0.863[JPT]
|
rs11879048
|
downstream_gene_variant |
0.862[CHB]
|
rs11667407
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.907[JPT]; 1.0[YRI]
|