ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	TUBGCP4
Symbol Alias	76P, FLJ14797
Approved Name	tubulin, gamma complex associated protein 4
Location	15q15
Position	chr15:43663293-43698258, +
External Links	HGNC: 16691 Entrez Gene: 27229 Ensembl: ENSG00000137822 UCSC: uc001zrn.2
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by LD-proxy

Gene related studies (count: 0)

Gene related SNPs (count: 10)

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)

rs_ID	Location	Functional Annotation
rs1058298	Chr15:43700930(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs884704	Chr15:43691150(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs1837960	Chr15:43698602(Fwd)	3_prime_UTR_variant; downstream_gene_variant; intron_variant
rs2278860	Chr15:43659046(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs3809481	Chr15:43662829(Fwd)	5_prime_UTR_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs7180812	Chr15:43695231(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs16957680	Chr15:43688405(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs999047	Chr15:43688916(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs17780920	Chr15:43662362(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs12912744	Chr15:43658935(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; stop_gained; upstream_gene_variant

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 11)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 11)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0006461	protein complex assembly	Biological Process	NAS[10562286]	28
GO:0005874	microtubule	Cellular Component		52
GO:0008274	gamma-tubulin ring complex	Cellular Component	NAS[10562286]	5
GO:0007020	microtubule nucleation	Biological Process	NAS[10562286]	8
GO:0015630	microtubule cytoskeleton	Cellular Component	TAS[10562286]	34
GO:0000086	G2/M transition of mitotic cell cycle	Biological Process		29
GO:0000278	mitotic cell cycle	Biological Process		63
GO:0000922	spindle pole	Cellular Component		22
GO:0005200	structural constituent of cytoskeleton	Molecular Function	NAS[10562286]	14
GO:0005813	centrosome	Cellular Component		71
GO:0005829	cytosol	Cellular Component		447

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with TUBGCP4 (count: 14)

Gene Symbol	Pathway Count	Pathway List
TUBGCP5	8	microtubule; gamma-tubulin ring complex; microtubule nucleation; G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
TUBGCP6	8	microtubule; gamma-tubulin ring complex; microtubule nucleation; G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
TUBGCP2	7	protein complex assembly; microtubule nucleation; G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
CDK5RAP2	6	microtubule; G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
CENPJ	6	microtubule; microtubule nucleation; G2/M transition of mitotic cell cycle; mitotic cell cycle; centrosome; cytosol;
CEP57	6	microtubule; microtubule cytoskeleton; G2/M transition of mitotic cell cycle; mitotic cell cycle; centrosome; cytosol;
NDE1	6	microtubule; microtubule nucleation; G2/M transition of mitotic cell cycle; mitotic cell cycle; centrosome; cytosol;
CKAP5	6	microtubule cytoskeleton; G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
MAPRE1	5	microtubule; G2/M transition of mitotic cell cycle; mitotic cell cycle; centrosome; cytosol;
TUBA4A	5	microtubule; microtubule cytoskeleton; G2/M transition of mitotic cell cycle; mitotic cell cycle; cytosol;
CLASP1	5	microtubule nucleation; G2/M transition of mitotic cell cycle; mitotic cell cycle; centrosome; cytosol;
CDC25B	5	G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
PLK1	5	G2/M transition of mitotic cell cycle; mitotic cell cycle; spindle pole; centrosome; cytosol;
TUBG1	5	G2/M transition of mitotic cell cycle; mitotic cell cycle; structural constituent of cytoskeleton; centrosome; cytosol;

Genes shared at least 2 KEGG pathways with TUBGCP4 (count: 0)

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Region: chr15:43663293..43698258 View in gBrowse