ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	HNRNPA1L2
Symbol Alias	LOC144983
Approved Name	heterogeneous nuclear ribonucleoprotein A1-like 2
Location	13q14.3
Position	chr13:53191605-53217919, +
External Links	HGNC: 27067 Entrez Gene: 144983 Ensembl: ENSG00000139675 UCSC: uc001vgy.1
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by LD-proxy

Gene related studies (count: 0)

Gene related SNPs (count: 24)

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)

rs_ID	Location	Functional Annotation
rs11148262	Chr13:53219557(Fwd)	downstream_gene_variant
rs9536216	Chr13:53221376(Fwd)	downstream_gene_variant
rs619222	Chr13:53197222(Fwd)	intron_variant; nc_transcript_variant
rs7319451	Chr13:53222464(Fwd)	downstream_gene_variant; upstream_gene_variant
rs694014	Chr13:53203709(Fwd)	intron_variant; nc_transcript_variant
rs662582	Chr13:53194404(Fwd)	intron_variant; nc_transcript_variant
rs676306	Chr13:53196163(Fwd)	5_prime_UTR_variant; nc_transcript_variant; non_coding_exon_variant
rs9526957	Chr13:53191674(Fwd)	5_prime_UTR_variant; upstream_gene_variant
rs646498	Chr13:53203834(Fwd)	intron_variant; nc_transcript_variant
rs693991	Chr13:53203671(Fwd)	intron_variant; nc_transcript_variant
rs617660	Chr13:53203389(Fwd)	5_prime_UTR_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs603070	Chr13:53201050(Fwd)	intron_variant; nc_transcript_variant
rs615509	Chr13:53200538(Fwd)	intron_variant; nc_transcript_variant
rs9526958	Chr13:53199043(Fwd)	intron_variant; nc_transcript_variant
rs2760780	Chr13:53198877(Fwd)	intron_variant; nc_transcript_variant
rs630892	Chr13:53196882(Fwd)	intron_variant; nc_transcript_variant
rs342774	Chr13:53218248(Fwd)	downstream_gene_variant
rs342777	Chr13:53215719(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs1925135	Chr13:53214717(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs682343	Chr13:53211352(Fwd)	intron_variant; nc_transcript_variant
rs237106	Chr13:53209432(Fwd)	intron_variant; nc_transcript_variant
rs342769	Chr13:53208747(Fwd)	intron_variant; nc_transcript_variant
rs342772	Chr13:53208140(Fwd)	intron_variant; nc_transcript_variant
rs186900	Chr13:53206713(Fwd)	intron_variant; nc_transcript_variant

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 6)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 1)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005681	spliceosomal complex	Cellular Component		51

GO terms by database search (count: 5)

ID	Name	Type	No. of Genes in ADHDgene
GO:0005737	cytoplasm	Cellular Component	690
GO:0000380	alternative mRNA splicing, via spliceosome	Biological Process	3
GO:0003723	RNA binding	Molecular Function	104
GO:0051028	mRNA transport	Biological Process	8
GO:0000166	nucleotide binding	Molecular Function	73

Gene related KEGG pathways (count: 1)

ID	Name	No. of Genes in ADHDgene	Brief Description
hsa03040	Spliceosome	47	After transcription, eukaryotic mRNA precursors contain prot...... After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified. More...

Genes shared at least 5 GO terms with HNRNPA1L2 (count: 1)

Gene Symbol	Pathway Count	Pathway List
HNRNPA1	5	spliceosomal complex; cytoplasm; RNA binding; mRNA transport; nucleotide binding;

Genes shared at least 2 KEGG pathways with HNRNPA1L2 (count: 0)

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Region: chr13:53191605..53217919 View in gBrowse