ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	GPAT2
Symbol Alias	CT123
Approved Name	glycerol-3-phosphate acyltransferase 2, mitochondrial
Name Alias	cancer/testis antigen 123
Location	2q11.2
Position	chr2:96687694-96705199, -
External Links	HGNC: 27168 Entrez Gene: 150763 Ensembl: ENSG00000186281 UCSC: uc010yuf.1
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	Mapped by LD-proxy

Gene related studies (count: 0)

Gene related SNPs (count: 3)

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

rs_ID	Location	Functional Annotation
rs2969475	Chr2:96685021(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs2692954	Chr2:96683378(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs2579515	Chr2:96686723(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 11)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 11)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0005739	mitochondrion	Cellular Component	NAS[18658143]	183
GO:0004366	glycerol-3-phosphate O-acyltransferase activity	Molecular Function		1
GO:0046474	glycerophospholipid biosynthetic process	Biological Process		30
GO:0016024	CDP-diacylglycerol biosynthetic process	Biological Process		1
GO:0016021	integral to membrane	Cellular Component		845
GO:0044281	small molecule metabolic process	Biological Process		248
GO:0019432	triglyceride biosynthetic process	Biological Process		12
GO:0006072	glycerol-3-phosphate metabolic process	Biological Process		1
GO:0005741	mitochondrial outer membrane	Cellular Component		21
GO:0006654	phosphatidic acid biosynthetic process	Biological Process		12
GO:0006644	phospholipid metabolic process	Biological Process		59

Gene related KEGG pathways (count: 3)

ID	Name	No. of Genes in ADHDgene
hsa01100	Metabolic pathways	237
hsa00561	Glycerolipid metabolism	15
hsa00564	Glycerophospholipid metabolism	22

Genes shared at least 5 GO terms with GPAT2 (count: 6)

Gene Symbol	Pathway Count	Pathway List
DGAT2	6	mitochondrion; glycerophospholipid biosynthetic process; integral to membrane; small molecule metabolic process; triglyceride biosynthetic process; phospholipid metabolic process;
LPCAT1	6	glycerophospholipid biosynthetic process; integral to membrane; small molecule metabolic process; triglyceride biosynthetic process; phosphatidic acid biosynthetic process; phospholipid metabolic process;
LPCAT4	6	glycerophospholipid biosynthetic process; integral to membrane; small molecule metabolic process; triglyceride biosynthetic process; phosphatidic acid biosynthetic process; phospholipid metabolic process;
PLD6	5	glycerophospholipid biosynthetic process; integral to membrane; small molecule metabolic process; mitochondrial outer membrane; phospholipid metabolic process;
PNPLA3	5	glycerophospholipid biosynthetic process; integral to membrane; small molecule metabolic process; triglyceride biosynthetic process; phospholipid metabolic process;
SLC44A1	5	glycerophospholipid biosynthetic process; integral to membrane; small molecule metabolic process; mitochondrial outer membrane; phospholipid metabolic process;

Genes shared at least 2 KEGG pathways with GPAT2 (count: 29)

Gene Symbol	Pathway Count	Pathway List
DGKH	3	Metabolic pathways; Glycerolipid metabolism; Glycerophospholipid metabolism;
MBOAT1	3	Metabolic pathways; Glycerolipid metabolism; Glycerophospholipid metabolism;
MBOAT2	3	Metabolic pathways; Glycerolipid metabolism; Glycerophospholipid metabolism;
ALDH3A2	2	Metabolic pathways; Glycerolipid metabolism;
CDIPT	2	Metabolic pathways; Glycerophospholipid metabolism;
CHKA	2	Metabolic pathways; Glycerophospholipid metabolism;
DAK	2	Metabolic pathways; Glycerolipid metabolism;
DGAT2	2	Metabolic pathways; Glycerolipid metabolism;
LIPF	2	Metabolic pathways; Glycerolipid metabolism;
LIPG	2	Metabolic pathways; Glycerolipid metabolism;
LPCAT1	2	Metabolic pathways; Glycerophospholipid metabolism;
LPCAT4	2	Metabolic pathways; Glycerophospholipid metabolism;
MGLL	2	Metabolic pathways; Glycerolipid metabolism;
PEMT	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G10	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G1B	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G2A	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G2D	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G2E	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G3	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G4B	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G5	2	Metabolic pathways; Glycerophospholipid metabolism;
PLA2G6	2	Metabolic pathways; Glycerophospholipid metabolism;
PLD1	2	Metabolic pathways; Glycerophospholipid metabolism;
PLD2	2	Metabolic pathways; Glycerophospholipid metabolism;
PNLIP	2	Metabolic pathways; Glycerolipid metabolism;
PNLIPRP1	2	Metabolic pathways; Glycerolipid metabolism;
PNLIPRP2	2	Metabolic pathways; Glycerolipid metabolism;
PNPLA3	2	Metabolic pathways; Glycerolipid metabolism;

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Region: chr2:96687694..96705199 View in gBrowse